STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH61183.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (208 aa)    
Predicted Functional Partners:
SDF80089.1
Signal transduction histidine kinase.
  
 
 0.962
SDH61139.1
Two component regulator propeller.
 
 
 0.956
SDF73461.1
Tetratricopeptide repeat-containing protein.
 
 
 0.855
SDI12425.1
Signal transduction histidine kinase.
 
 
 0.854
SDI42580.1
Two-component system, NarL family, sensor histidine kinase DesK.
 
 
 0.854
SDI65497.1
Two-component system, NarL family, sensor histidine kinase DesK.
 
 
 0.854
SDG84862.1
Hypothetical protein.
 
 
 0.853
SDG07449.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 
 0.849
SDH65587.1
Signal transduction histidine kinase.
 
 
 0.839
SDH61267.1
Helix-turn-helix domain-containing protein.
 
    0.622
Your Current Organism:
Mucilaginibacter gossypii
NCBI taxonomy Id: 551996
Other names: KCTC 22380, M. gossypii, Mucilaginibacter gossypii Madhaiyan et al. 2010, NCIMB 14470, Pedobacter sp. Gh-67, strain Gh-67
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