STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH88654.1Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family. (315 aa)    
Predicted Functional Partners:
SDH88447.1
Glycosyl hydrolases family 28; Belongs to the glycosyl hydrolase 28 family.
 
    0.695
SDF75790.1
Pectate lyase.
 
   
 0.686
SDG29436.1
Lysophospholipase L1.
  
     0.636
SDG29472.1
Lysophospholipase L1.
  
     0.625
SDG02204.1
Glycosyl hydrolases family 43.
  
   
 0.622
SDG97864.1
Glycosyl hydrolase family 10.
 
  
 0.588
SDG02163.1
Alpha-L-arabinofuranosidase.
 
  
 0.568
SDG58651.1
Hypothetical protein.
  
   
 0.559
SDH88620.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.550
SDH63167.1
Peptidase.
  
     0.545
Your Current Organism:
Mucilaginibacter gossypii
NCBI taxonomy Id: 551996
Other names: KCTC 22380, M. gossypii, Mucilaginibacter gossypii Madhaiyan et al. 2010, NCIMB 14470, Pedobacter sp. Gh-67, strain Gh-67
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.