STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI00682.1OmpA-OmpF porin, OOP family. (177 aa)    
Predicted Functional Partners:
SDI34912.1
Membrane-bound lytic murein transglycosylase D.
 
 
 
 0.581
SDG83217.1
Lipoprotein-releasing system permease protein.
  
 
   0.548
SDG57836.1
Chemotaxis protein MotB.
  
 
 0.515
BamA
Beta-barrel assembly machine subunit BamA.
  
 
 0.500
SDG34813.1
Outer membrane protein OmpA.
 
 
0.495
SDG86536.1
Chemotaxis protein MotB.
  
 
 0.477
SDF77455.1
Component of the Tol biopolymer transport system.
 
 
 0.463
SDH95606.1
Periplasmic chaperone for outer membrane proteins Skp.
 
 
 0.459
SDH30553.1
Tetratricopeptide repeat-containing protein.
   
 
 0.446
SDI00636.1
TonB-dependent Receptor Plug Domain.
  
    0.439
Your Current Organism:
Mucilaginibacter gossypii
NCBI taxonomy Id: 551996
Other names: KCTC 22380, M. gossypii, Mucilaginibacter gossypii Madhaiyan et al. 2010, NCIMB 14470, Pedobacter sp. Gh-67, strain Gh-67
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.