STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI00705.1Alginate lyase. (393 aa)    
Predicted Functional Partners:
SDG75553.1
Trehalose utilisation.
  
     0.544
SDH30409.1
Alginate lyase.
  
     0.527
SDI00736.1
Chitinase, GH18 family; Belongs to the glycosyl hydrolase 18 family.
 
     0.519
SDG31877.1
DinB superfamily protein.
  
     0.445
SDI00682.1
OmpA-OmpF porin, OOP family.
       0.434
SDI00567.1
Protein of unknown function.
 
     0.418
SDG19714.1
Predicted dehydrogenase.
  
     0.413
SDG29574.1
Rhamnogalacturonyl hydrolase YesR.
 
     0.409
SDH01587.1
Glycosyl Hydrolase Family 88.
     0.404
Your Current Organism:
Mucilaginibacter gossypii
NCBI taxonomy Id: 551996
Other names: KCTC 22380, M. gossypii, Mucilaginibacter gossypii Madhaiyan et al. 2010, NCIMB 14470, Pedobacter sp. Gh-67, strain Gh-67
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.