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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFX07146.1Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (437 aa)    
Predicted Functional Partners:
KFX02637.1
Pectin acetylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.765
KFX07561.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.749
KFX00627.1
Tat pathway signal sequence domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.740
KFX02638.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.720
KFX04437.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.718
KFX04439.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.713
KFX04699.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.707
KFX05778.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.706
KFX06852.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.704
KFX04438.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.703
Your Current Organism:
Pectobacterium betavasculorum
NCBI taxonomy Id: 55207
Other names: ATCC 43762, CFBP 2122, CIP 105193, DSM 18076, Erwinia carotovora subsp. betavasculorum, ICMP 4226, LMG 2464, LMG 2466, LMG:2464, LMG:2466, NCPPB 2795, P. betavasculorum, Pectobacterium carotovorum subsp. betavasculorum, UCPB 193
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