STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFX04389.1Carbapenem biosynthesis protein CpmH; Derived by automated computational analysis using gene prediction method: Protein Homology. (184 aa)    
Predicted Functional Partners:
KFX04387.1
Spore coat protein CotH; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.778
KFX04388.1
CpmJ protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
KFX04385.1
Antibiotic biosynthesis protein CarD; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.603
KFX04386.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.598
KFX04384.1
Spore coat protein CotH; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.475
KFX04382.1
Spore coat protein CotF; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.455
KFX04383.1
Spore coat protein CotG; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.455
Your Current Organism:
Pectobacterium betavasculorum
NCBI taxonomy Id: 55207
Other names: ATCC 43762, CFBP 2122, CIP 105193, DSM 18076, Erwinia carotovora subsp. betavasculorum, ICMP 4226, LMG 2464, LMG 2466, LMG:2464, LMG:2466, NCPPB 2795, P. betavasculorum, Pectobacterium carotovorum subsp. betavasculorum, UCPB 193
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.