STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFX03545.1HNH endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (147 aa)    
Predicted Functional Partners:
KFX03548.1
HK97 family phage portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.964
KFX03543.1
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.949
KFX03544.1
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.945
KFX03549.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.941
KFX03547.1
Head-tail adaptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.929
KFX03550.1
Capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.918
KFX03546.1
Bacteriophage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.791
KFX03553.1
DNA primase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.787
metH
B12-dependent methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.763
dut
Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.
    
  0.707
Your Current Organism:
Pectobacterium betavasculorum
NCBI taxonomy Id: 55207
Other names: ATCC 43762, CFBP 2122, CIP 105193, DSM 18076, Erwinia carotovora subsp. betavasculorum, ICMP 4226, LMG 2464, LMG 2466, LMG:2464, LMG:2466, NCPPB 2795, P. betavasculorum, Pectobacterium carotovorum subsp. betavasculorum, UCPB 193
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