STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA50_01665Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (394 aa)    
Predicted Functional Partners:
HA50_01660
Sodium:solute symporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.935
HA50_01670
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.897
HA50_09805
Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.829
HA50_22515
Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.829
HA50_13110
ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.743
HA50_20595
Dihydrodipicolinate synthase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DapA family.
 
   
 0.713
HA50_28490
Arylsulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.674
HA50_07755
Glycoside hydrolase 105 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.637
HA50_23430
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.557
HA50_07130
DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the MT-A70-like family.
   
    0.556
Your Current Organism:
Pantoea cypripedii
NCBI taxonomy Id: 55209
Other names: ATCC 29267, Bacillus cypripedii, CFBP 3613, CIP 105195, DSM 3873, Erwinia carotovora var. cypripedii, Erwinia cypripedii, Erwinia cyrpipedii, LMG 2655, LMG 2657, LMG:2655, LMG:2657, NCPPB 3004, P. cypripedii, Pectobacterium cypripedii
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