Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
HA50_02065Shufflon protein B; Derived by automated computational analysis using gene prediction method: Protein Homology. (430 aa)    
Predicted Functional Partners:
HA50_02045
Pilus assembly protein PilR; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.954
HA50_02040
Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.908
HA50_26920
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.879
HA50_02060
Prepilin peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.864
HA50_02055
Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.846
HA50_15575
Hypothetical protein; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.836
HA50_16670
Pilus assembly protein PilR; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.813
HA50_02050
Pilus assembly protein PilX; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.804
HA50_02025
Type IVB pilus formation outer membrane protein, R64 PilN family; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.780
HA50_02030
Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.774
Your Current Organism:
Pantoea cypripedii
NCBI taxonomy Id: 55209
Other names: ATCC 29267, Bacillus cypripedii, CFBP 3613, CIP 105195, DSM 3873, Erwinia carotovora var. cypripedii, Erwinia cypripedii, Erwinia cyrpipedii, LMG 2655, LMG 2657, LMG:2655, LMG:2657, NCPPB 3004, P. cypripedii, Pectobacterium cypripedii
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