Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
HA50_02445Anti-sigma B factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology. (101 aa)    
Predicted Functional Partners:
HA50_02425
Phospholipid ABC transporter ATP-binding protein MlaF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.998
HA50_02440
Phospholipid-binding protein MlaC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.997
HA50_02430
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.996
HA50_02435
Outer membrane lipid asymmetry maintenance protein MlaD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.996
lptC
LPS export ABC transporter periplasmic protein LptC; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family.
 
     0.863
HA50_20435
ATP F0F1 synthase subunit I; Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.772
HA50_07025
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.768
HA50_10200
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.763
HA50_04870
Prephenate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.762
HA50_02275
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.760
Your Current Organism:
Pantoea cypripedii
NCBI taxonomy Id: 55209
Other names: ATCC 29267, Bacillus cypripedii, CFBP 3613, CIP 105195, DSM 3873, Erwinia carotovora var. cypripedii, Erwinia cypripedii, Erwinia cyrpipedii, LMG 2655, LMG 2657, LMG:2655, LMG:2657, NCPPB 3004, P. cypripedii, Pectobacterium cypripedii
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