STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA50_02880Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)    
Predicted Functional Partners:
HA50_02875
S-adenosylhomocysteine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.952
HA50_19400
Translation factor (SUA5); Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SUA5 family.
  
     0.635
HA50_21000
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.617
HA50_02870
Nickel transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NiCoT transporter (TC 2.A.52) family.
       0.523
HA50_02885
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.517
HA50_27385
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.501
HA50_27395
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.498
HA50_06040
Suppressor of fused protein (SUFU); Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.495
HA50_07135
Crossover junction endodeoxyribonuclease; Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC; Belongs to the rusA family.
  
     0.456
Your Current Organism:
Pantoea cypripedii
NCBI taxonomy Id: 55209
Other names: ATCC 29267, Bacillus cypripedii, CFBP 3613, CIP 105195, DSM 3873, Erwinia carotovora var. cypripedii, Erwinia cypripedii, Erwinia cyrpipedii, LMG 2655, LMG 2657, LMG:2655, LMG:2657, NCPPB 3004, P. cypripedii, Pectobacterium cypripedii
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