STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA50_04405Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)    
Predicted Functional Partners:
HA50_04410
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.952
HA50_04400
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.940
HA50_04395
IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.642
HA50_00360
Dipeptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
  
 
  0.627
HA50_23605
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.624
ppnP
Hypothetical protein; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.
       0.572
HA50_19605
Aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.556
HA50_06040
Suppressor of fused protein (SUFU); Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.497
HA50_01520
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.459
HA50_06345
With GsiBCD is involved in glutathione import; GsiA contains 2 ATP-binding domains; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
   
 
  0.453
Your Current Organism:
Pantoea cypripedii
NCBI taxonomy Id: 55209
Other names: ATCC 29267, Bacillus cypripedii, CFBP 3613, CIP 105195, DSM 3873, Erwinia carotovora var. cypripedii, Erwinia cypripedii, Erwinia cyrpipedii, LMG 2655, LMG 2657, LMG:2655, LMG:2657, NCPPB 3004, P. cypripedii, Pectobacterium cypripedii
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