Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HA50_04470Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)    
Predicted Functional Partners:
HA50_04465
DUF4810 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.990
HA50_04460
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.978
HA50_04455
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.509
HA50_27210
Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.502
HA50_27215
Filamentous hemagglutinin; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.502
HA50_27370
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.414
Your Current Organism:
Pantoea cypripedii
NCBI taxonomy Id: 55209
Other names: ATCC 29267, Bacillus cypripedii, CFBP 3613, CIP 105195, DSM 3873, Erwinia carotovora var. cypripedii, Erwinia cypripedii, Erwinia cyrpipedii, LMG 2655, LMG 2657, LMG:2655, LMG:2657, NCPPB 3004, P. cypripedii, Pectobacterium cypripedii
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