HA50_05740 protein (Pantoea cypripedii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

HA50_05740

Cation transporter; Involved in zinc efflux across the cytoplasmic membrane; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa)

Predicted Functional Partners:

HA50_05750

0.816

HA50_05745

0.812

copA

0.668

HA50_05755

0.532

fieF

0.526

HA50_09485

0.502

zntA

0.483

HA50_16425

0.449

HA50_23680

0.449

HA50_28255

0.449

Your Current Organism:

Pantoea cypripedii

NCBI taxonomy Id: 55209
Other names: ATCC 29267, Bacillus cypripedii, CFBP 3613, CIP 105195, DSM 3873, Erwinia carotovora var. cypripedii, Erwinia cypripedii, Erwinia cyrpipedii, LMG 2655, LMG 2657, LMG:2655, LMG:2657, NCPPB 3004, P. cypripedii, Pectobacterium cypripedii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HA50_05740	HA50_05745	HA50_05740	HA50_05745	Cation transporter; Involved in zinc efflux across the cytoplasmic membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensor histidine kinase BvgS; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.812
HA50_05740	HA50_05750	HA50_05740	HA50_05750	Cation transporter; Involved in zinc efflux across the cytoplasmic membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.816
HA50_05740	HA50_05755	HA50_05740	HA50_05755	Cation transporter; Involved in zinc efflux across the cytoplasmic membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.532
HA50_05740	HA50_09485	HA50_05740	HA50_09485	Cation transporter; Involved in zinc efflux across the cytoplasmic membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome C biogenesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.502
HA50_05740	HA50_16425	HA50_05740	HA50_16425	Cation transporter; Involved in zinc efflux across the cytoplasmic membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
HA50_05740	HA50_23680	HA50_05740	HA50_23680	Cation transporter; Involved in zinc efflux across the cytoplasmic membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
HA50_05740	HA50_28255	HA50_05740	HA50_28255	Cation transporter; Involved in zinc efflux across the cytoplasmic membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
HA50_05740	copA	HA50_05740	HA50_04965	Cation transporter; Involved in zinc efflux across the cytoplasmic membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cu+ exporting ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.668
HA50_05740	fieF	HA50_05740	HA50_19960	Cation transporter; Involved in zinc efflux across the cytoplasmic membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	Divalent metal cation transporter FieF; Cation-efflux transporter that may have a role in detoxification.	0.526
HA50_05740	zntA	HA50_05740	HA50_01055	Cation transporter; Involved in zinc efflux across the cytoplasmic membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	P-type ATPase involved in the export of lead, cadmium, zinc and mercury; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.483
HA50_05745	HA50_05740	HA50_05745	HA50_05740	Sensor histidine kinase BvgS; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cation transporter; Involved in zinc efflux across the cytoplasmic membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.812
HA50_05745	HA50_05750	HA50_05745	HA50_05750	Sensor histidine kinase BvgS; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
HA50_05745	HA50_05755	HA50_05745	HA50_05755	Sensor histidine kinase BvgS; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.592
HA50_05745	HA50_09485	HA50_05745	HA50_09485	Sensor histidine kinase BvgS; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome C biogenesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.479
HA50_05745	copA	HA50_05745	HA50_04965	Sensor histidine kinase BvgS; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cu+ exporting ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.516
HA50_05750	HA50_05740	HA50_05750	HA50_05740	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cation transporter; Involved in zinc efflux across the cytoplasmic membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.816
HA50_05750	HA50_05745	HA50_05750	HA50_05745	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensor histidine kinase BvgS; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
HA50_05750	HA50_05755	HA50_05750	HA50_05755	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.532
HA50_05755	HA50_05740	HA50_05755	HA50_05740	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cation transporter; Involved in zinc efflux across the cytoplasmic membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.532
HA50_05755	HA50_05745	HA50_05755	HA50_05745	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensor histidine kinase BvgS; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.592

page 1 of 2

Server load: medium (46%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About