STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA50_06890Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0319 family. (212 aa)    
Predicted Functional Partners:
HA50_08575
Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.752
HA50_11500
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.719
HA50_07995
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.712
HA50_06040
Suppressor of fused protein (SUFU); Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.708
HA50_01370
Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.700
HA50_01275
Phage shock protein G; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.674
ycgR
Flagellar brake protein; Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)-dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility.
  
     0.674
HA50_00425
Cellulose biosynthesis protein BcsE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.661
HA50_00975
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.647
HA50_18195
Opacity-associated protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.641
Your Current Organism:
Pantoea cypripedii
NCBI taxonomy Id: 55209
Other names: ATCC 29267, Bacillus cypripedii, CFBP 3613, CIP 105195, DSM 3873, Erwinia carotovora var. cypripedii, Erwinia cypripedii, Erwinia cyrpipedii, LMG 2655, LMG 2657, LMG:2655, LMG:2657, NCPPB 3004, P. cypripedii, Pectobacterium cypripedii
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