STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA50_07115Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)    
Predicted Functional Partners:
HA50_07120
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
HA50_07130
DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the MT-A70-like family.
       0.565
HA50_23170
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.529
HA50_07125
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.522
HA50_07190
Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.492
HA50_07110
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.489
HA50_16390
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.478
HA50_07135
Crossover junction endodeoxyribonuclease; Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC; Belongs to the rusA family.
  
    0.433
Your Current Organism:
Pantoea cypripedii
NCBI taxonomy Id: 55209
Other names: ATCC 29267, Bacillus cypripedii, CFBP 3613, CIP 105195, DSM 3873, Erwinia carotovora var. cypripedii, Erwinia cypripedii, Erwinia cyrpipedii, LMG 2655, LMG 2657, LMG:2655, LMG:2657, NCPPB 3004, P. cypripedii, Pectobacterium cypripedii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.