STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA50_08010DNA-binding transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)    
Predicted Functional Partners:
HA50_08015
D-ribose ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.678
HA50_08035
Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.626
HA50_11140
Dihydroxyacetone kinase subunit DhaK; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.611
HA50_08040
Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.610
HA50_25560
D-erythrulose kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.589
citD
Citrate lyase acyl carrier protein; Covalent carrier of the coenzyme of citrate lyase.
 
 
  0.565
HA50_11135
Dihydroxyacetone kinase subunit L; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.553
HA50_08030
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.
 
    0.549
HA50_21420
Citrate (pro-3S)-lyase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.
  
 
  0.544
HA50_21425
Citrate lyase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.542
Your Current Organism:
Pantoea cypripedii
NCBI taxonomy Id: 55209
Other names: ATCC 29267, Bacillus cypripedii, CFBP 3613, CIP 105195, DSM 3873, Erwinia carotovora var. cypripedii, Erwinia cypripedii, Erwinia cyrpipedii, LMG 2655, LMG 2657, LMG:2655, LMG:2657, NCPPB 3004, P. cypripedii, Pectobacterium cypripedii
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