STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA50_09050Barstar, RNAse (barnase) inhibitor; Derived by automated computational analysis using gene prediction method: Protein Homology. (87 aa)    
Predicted Functional Partners:
HA50_09045
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.993
HA50_20645
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.736
HA50_04870
Prephenate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.696
secM
SecA regulator SecM; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
     0.673
HA50_02445
Anti-sigma B factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.643
HA50_19020
Pilus assembly protein HofM; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.632
HA50_01425
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.624
HA50_14030
RpoE-regulated lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.608
HA50_16100
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.576
HA50_27580
GNAT family N-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.570
Your Current Organism:
Pantoea cypripedii
NCBI taxonomy Id: 55209
Other names: ATCC 29267, Bacillus cypripedii, CFBP 3613, CIP 105195, DSM 3873, Erwinia carotovora var. cypripedii, Erwinia cypripedii, Erwinia cyrpipedii, LMG 2655, LMG 2657, LMG:2655, LMG:2657, NCPPB 3004, P. cypripedii, Pectobacterium cypripedii
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