STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA50_09415Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (444 aa)    
Predicted Functional Partners:
HA50_09420
Enamine deaminase RidA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.746
HA50_06855
Porin OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
   
 
 0.530
HA50_13690
Phospholipid-binding lipoprotein MlaA; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.525
HA50_27710
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.501
HA50_11795
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.488
HA50_09425
PadR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.461
HA50_09410
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.441
HA50_09405
5-carboxymethyl-2-hydroxymuconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.438
HA50_09395
3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.414
HA50_09400
DUF4440 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.414
Your Current Organism:
Pantoea cypripedii
NCBI taxonomy Id: 55209
Other names: ATCC 29267, Bacillus cypripedii, CFBP 3613, CIP 105195, DSM 3873, Erwinia carotovora var. cypripedii, Erwinia cypripedii, Erwinia cyrpipedii, LMG 2655, LMG 2657, LMG:2655, LMG:2657, NCPPB 3004, P. cypripedii, Pectobacterium cypripedii
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