STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA50_10310Murein peptide amidase A; Derived by automated computational analysis using gene prediction method: Protein Homology. (237 aa)    
Predicted Functional Partners:
HA50_08000
Muramoyltetrapeptide carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.801
HA50_10315
L-Ala-D/L-Glu epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.759
HA50_13065
Bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.736
HA50_28650
Mandelate racemase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
     
 0.725
HA50_19635
Dipeptide epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.724
HA50_18375
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.714
wecH
Acetyltransferase; Responsible for the incorporation of O-acetyl groups into the enterobacterial common antigen (ECA) trisaccharide repeat units.
  
     0.710
HA50_21000
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.700
HA50_14890
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.690
HA50_08575
Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.679
Your Current Organism:
Pantoea cypripedii
NCBI taxonomy Id: 55209
Other names: ATCC 29267, Bacillus cypripedii, CFBP 3613, CIP 105195, DSM 3873, Erwinia carotovora var. cypripedii, Erwinia cypripedii, Erwinia cyrpipedii, LMG 2655, LMG 2657, LMG:2655, LMG:2657, NCPPB 3004, P. cypripedii, Pectobacterium cypripedii
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