STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA50_12085Hydantoin utilization protein B; Derived by automated computational analysis using gene prediction method: Protein Homology. (657 aa)    
Predicted Functional Partners:
HA50_12090
Hydantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.999
putA
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
    
  0.897
HA50_05160
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.886
HA50_01845
Cytosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.775
HA50_03145
Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.757
HA50_12095
GNAT family N-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.755
HA50_12150
Haloacid dehalogenase, type II; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.699
HA50_12115
Histone acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.636
HA50_23980
N-carbamoyl-D-amino-acid hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.579
HA50_12120
D-amino-acid oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.548
Your Current Organism:
Pantoea cypripedii
NCBI taxonomy Id: 55209
Other names: ATCC 29267, Bacillus cypripedii, CFBP 3613, CIP 105195, DSM 3873, Erwinia carotovora var. cypripedii, Erwinia cypripedii, Erwinia cyrpipedii, LMG 2655, LMG 2657, LMG:2655, LMG:2657, NCPPB 3004, P. cypripedii, Pectobacterium cypripedii
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