STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA50_13775Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)    
Predicted Functional Partners:
HA50_01570
Pyrroloquinoline quinone-dependent dehydrogenase; Quinoprotein glucose dehydrogenase; catalyzes the formation of D-glucono-1,5-lactone from D-glucose and ubiquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.758
HA50_01500
GMC family oxidoreductase; Part of the heterotrimer that catalyzes the conversion of D- gluconate to 2-dehydro-D-gluconate. This subunit functions as the dehydrogenase; Belongs to the GMC oxidoreductase family.
   
 
  0.695
HA50_23425
Pyrroloquinoline quinone-dependent dehydrogenase; Quinoprotein glucose dehydrogenase; catalyzes the formation of D-glucono-1,5-lactone from D-glucose and ubiquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.651
HA50_01175
Gluconokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.643
HA50_28860
Pyrroloquinoline quinone-dependent dehydrogenase; Quinoprotein glucose dehydrogenase; catalyzes the formation of D-glucono-1,5-lactone from D-glucose and ubiquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.606
HA50_09560
Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.605
HA50_06395
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.602
dgoD
Galactonate dehydratase; Catalyzes the dehydration of D-galactonate to 2-keto-3-deoxy- D-galactonate.
 
  
 0.581
ilvD
Dihydroxy-acid dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the IlvD/Edd family.
    
 0.562
HA50_25795
Catalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.
   
 
  0.545
Your Current Organism:
Pantoea cypripedii
NCBI taxonomy Id: 55209
Other names: ATCC 29267, Bacillus cypripedii, CFBP 3613, CIP 105195, DSM 3873, Erwinia carotovora var. cypripedii, Erwinia cypripedii, Erwinia cyrpipedii, LMG 2655, LMG 2657, LMG:2655, LMG:2657, NCPPB 3004, P. cypripedii, Pectobacterium cypripedii
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