STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA50_14930Glycine betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (331 aa)    
Predicted Functional Partners:
HA50_14920
Glycine betaine/L-proline ABC transporter ATP-binding protein; With ProWX is involved in the high-affinity uptake of glycine betaine; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
HA50_14925
Proline/betaine ABC transporter permease ProW; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
HA50_00215
MltR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.566
purN
Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
   
    0.543
HA50_14935
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.497
HA50_13760
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.496
HA50_02430
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.474
HA50_18500
Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.471
HA50_29055
Maltose ABC transporter permease MalF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.466
HA50_06075
Osmoprotectant uptake system permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.448
Your Current Organism:
Pantoea cypripedii
NCBI taxonomy Id: 55209
Other names: ATCC 29267, Bacillus cypripedii, CFBP 3613, CIP 105195, DSM 3873, Erwinia carotovora var. cypripedii, Erwinia cypripedii, Erwinia cyrpipedii, LMG 2655, LMG 2657, LMG:2655, LMG:2657, NCPPB 3004, P. cypripedii, Pectobacterium cypripedii
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