STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA50_16545Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 28 family. (435 aa)    
Predicted Functional Partners:
uxaC
Glucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.926
HA50_16550
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
       0.773
kduI
5-dehydro-4-deoxy-D-glucuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
     0.709
HA50_24120
MFS transporter; Uncharacterized member of the GPH family of galactose-pentose-hexuronide transporters; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.
 
 
  0.675
HA50_05005
Multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.650
HA50_30380
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  0.650
HA50_28815
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.616
HA50_20780
Pectin acetylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.608
HA50_23430
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.595
HA50_07755
Glycoside hydrolase 105 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.590
Your Current Organism:
Pantoea cypripedii
NCBI taxonomy Id: 55209
Other names: ATCC 29267, Bacillus cypripedii, CFBP 3613, CIP 105195, DSM 3873, Erwinia carotovora var. cypripedii, Erwinia cypripedii, Erwinia cyrpipedii, LMG 2655, LMG 2657, LMG:2655, LMG:2657, NCPPB 3004, P. cypripedii, Pectobacterium cypripedii
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.