STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA50_19030DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (118 aa)    
Predicted Functional Partners:
HA50_21285
Addiction module protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.793
HA50_22905
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.620
HA50_22910
Addiction module toxin RelE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.611
HA50_23355
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.478
HA50_27625
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.457
HA50_25200
Antitoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.452
HA50_19025
Carboxypeptidase/penicillin-binding protein 1A; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.439
HA50_05130
Addiction module toxin RelE; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.418
Your Current Organism:
Pantoea cypripedii
NCBI taxonomy Id: 55209
Other names: ATCC 29267, Bacillus cypripedii, CFBP 3613, CIP 105195, DSM 3873, Erwinia carotovora var. cypripedii, Erwinia cypripedii, Erwinia cyrpipedii, LMG 2655, LMG 2657, LMG:2655, LMG:2657, NCPPB 3004, P. cypripedii, Pectobacterium cypripedii
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