STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA50_19235ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (237 aa)    
Predicted Functional Partners:
HA50_19245
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.915
HA50_19240
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.898
HA50_05165
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.
 
  
 
0.727
HA50_11820
3-dehydroshikimate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.639
HA50_03700
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.637
HA50_14230
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.635
HA50_14015
Sulfate ABC transporter permease subunit CysT; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
  
  0.633
HA50_14225
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.572
HA50_14010
Sulfate ABC transporter permease subunit CysW; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.548
HA50_19230
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.537
Your Current Organism:
Pantoea cypripedii
NCBI taxonomy Id: 55209
Other names: ATCC 29267, Bacillus cypripedii, CFBP 3613, CIP 105195, DSM 3873, Erwinia carotovora var. cypripedii, Erwinia cypripedii, Erwinia cyrpipedii, LMG 2655, LMG 2657, LMG:2655, LMG:2657, NCPPB 3004, P. cypripedii, Pectobacterium cypripedii
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