STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA50_19335Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (203 aa)    
Predicted Functional Partners:
HA50_19340
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.948
HA50_27430
Conjugal transfer protein TrbA; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.902
HA50_00960
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.865
HA50_16730
Conjugative coupling factor TraD, PFGI-1 class; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.649
HA50_22800
Type IV conjugative transfer system coupling protein TraD; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 
 0.649
HA50_26360
Type IV conjugative transfer system coupling protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.649
HA50_26820
Conjugal transfer protein TrbC; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.649
HA50_27100
Conjugative coupling factor TraD, PFGI-1 class; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.649
dut
Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.
    
  0.535
folD
Bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
    
  0.527
Your Current Organism:
Pantoea cypripedii
NCBI taxonomy Id: 55209
Other names: ATCC 29267, Bacillus cypripedii, CFBP 3613, CIP 105195, DSM 3873, Erwinia carotovora var. cypripedii, Erwinia cypripedii, Erwinia cyrpipedii, LMG 2655, LMG 2657, LMG:2655, LMG:2657, NCPPB 3004, P. cypripedii, Pectobacterium cypripedii
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