STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA50_20190Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (131 aa)    
Predicted Functional Partners:
HA50_15020
Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.854
HA50_07995
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.782
HA50_20185
Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.734
HA50_01535
VOC family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.614
thiG
Thiazole synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
  
 
 0.614
HA50_01370
Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.575
HA50_19530
Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.561
HA50_00295
Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.542
HA50_12415
Metal chaperone, involved in Zn homeostasis, GTPase of family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.525
HA50_18165
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.525
Your Current Organism:
Pantoea cypripedii
NCBI taxonomy Id: 55209
Other names: ATCC 29267, Bacillus cypripedii, CFBP 3613, CIP 105195, DSM 3873, Erwinia carotovora var. cypripedii, Erwinia cypripedii, Erwinia cyrpipedii, LMG 2655, LMG 2657, LMG:2655, LMG:2657, NCPPB 3004, P. cypripedii, Pectobacterium cypripedii
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