STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA50_21400Malate permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (456 aa)    
Predicted Functional Partners:
HA50_21430
holo-ACP synthase CitX; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.895
HA50_21410
[citrate (pro-3S)-lyase] ligase; Acetylation of prosthetic group (2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A) of the gamma subunit of citrate lyase.
 
   
 0.872
citD
Citrate lyase acyl carrier protein; Covalent carrier of the coenzyme of citrate lyase.
 
   
 0.851
HA50_21420
Citrate (pro-3S)-lyase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.
 
   
 0.840
HA50_21425
Citrate lyase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.840
citG
triphosphoribosyl-dephospho-CoA synthase CitG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.817
HA50_21395
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.803
dpiA
Response regulator; Regulates the expression of citrate fermentation genes; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.799
HA50_21405
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.745
HA50_14055
NADP-dependent malic enzyme; NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.488
Your Current Organism:
Pantoea cypripedii
NCBI taxonomy Id: 55209
Other names: ATCC 29267, Bacillus cypripedii, CFBP 3613, CIP 105195, DSM 3873, Erwinia carotovora var. cypripedii, Erwinia cypripedii, Erwinia cyrpipedii, LMG 2655, LMG 2657, LMG:2655, LMG:2657, NCPPB 3004, P. cypripedii, Pectobacterium cypripedii
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