STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA50_21605Addiction module toxin RelE; Derived by automated computational analysis using gene prediction method: Protein Homology. (96 aa)    
Predicted Functional Partners:
HA50_21610
Antitoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.967
HA50_24265
Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/transcriptional repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.947
HA50_16880
Plasmid stabilization protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
 
 
 0.861
HA50_20810
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.851
HA50_07330
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.515
HA50_05130
Addiction module toxin RelE; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.511
HA50_28050
Antitoxin; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
 
 
 0.446
HA50_21600
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.409
HA50_21615
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.407
HA50_25585
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.401
Your Current Organism:
Pantoea cypripedii
NCBI taxonomy Id: 55209
Other names: ATCC 29267, Bacillus cypripedii, CFBP 3613, CIP 105195, DSM 3873, Erwinia carotovora var. cypripedii, Erwinia cypripedii, Erwinia cyrpipedii, LMG 2655, LMG 2657, LMG:2655, LMG:2657, NCPPB 3004, P. cypripedii, Pectobacterium cypripedii
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