STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA50_21990LysR family transcriptional regulator; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the hyi family. (261 aa)    
Predicted Functional Partners:
HA50_21995
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.926
HA50_22000
Arylsulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.827
HA50_22010
Aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.726
HA50_22005
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.716
HA50_21215
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.686
HA50_09115
6-phosphogluconate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.602
garR
2-hydroxy-3-oxopropionate reductase; Catalyzes the reduction of tatronate semialdehyde to D- glycerate; Belongs to the HIBADH-related family. 2-hydroxy-3- oxopropionate reductase subfamily.
 
 
 0.593
HA50_03650
Serine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.548
HA50_22015
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.532
HA50_16490
Glycerate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.525
Your Current Organism:
Pantoea cypripedii
NCBI taxonomy Id: 55209
Other names: ATCC 29267, Bacillus cypripedii, CFBP 3613, CIP 105195, DSM 3873, Erwinia carotovora var. cypripedii, Erwinia cypripedii, Erwinia cyrpipedii, LMG 2655, LMG 2657, LMG:2655, LMG:2657, NCPPB 3004, P. cypripedii, Pectobacterium cypripedii
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