STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA50_22795Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1693 aa)    
Predicted Functional Partners:
HA50_22800
Type IV conjugative transfer system coupling protein TraD; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
   
 0.942
recB
Exodeoxyribonuclease V subunit beta; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and rep [...]
  
 0.939
recC
Exodeoxyribonuclease V subunit gamma; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and re [...]
  
 0.931
HA50_22810
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.892
HA50_22815
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.888
HA50_22825
type-F conjugative transfer system pilin assembly protein TraF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.885
HA50_22845
type-F conjugative transfer system protein TraW; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.860
HA50_22830
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    0.847
HA50_22840
Conjugal transfer protein TraU; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.828
HA50_22855
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.817
Your Current Organism:
Pantoea cypripedii
NCBI taxonomy Id: 55209
Other names: ATCC 29267, Bacillus cypripedii, CFBP 3613, CIP 105195, DSM 3873, Erwinia carotovora var. cypripedii, Erwinia cypripedii, Erwinia cyrpipedii, LMG 2655, LMG 2657, LMG:2655, LMG:2657, NCPPB 3004, P. cypripedii, Pectobacterium cypripedii
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