STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA50_23455GMC family oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (590 aa)    
Predicted Functional Partners:
HA50_23450
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.962
HA50_28830
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.915
HA50_29250
Gluconate 2-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.912
HA50_21260
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.911
HA50_23220
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.909
HA50_23460
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.903
HA50_01495
Gluconate 2-dehydrogenase; Part of the heterotrimer that catalyzes the conversion of D- gluconate to 2-dehydro-D-gluconate. The role of this subunit in the heterotrimer is not known.
 
  0.884
HA50_02810
Gluconate 2-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.884
HA50_30010
Gluconate 2-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.871
HA50_16495
Gluconate 2-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.854
Your Current Organism:
Pantoea cypripedii
NCBI taxonomy Id: 55209
Other names: ATCC 29267, Bacillus cypripedii, CFBP 3613, CIP 105195, DSM 3873, Erwinia carotovora var. cypripedii, Erwinia cypripedii, Erwinia cyrpipedii, LMG 2655, LMG 2657, LMG:2655, LMG:2657, NCPPB 3004, P. cypripedii, Pectobacterium cypripedii
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