STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA50_24005MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (417 aa)    
Predicted Functional Partners:
HA50_24000
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.752
HA50_25565
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.573
HA50_23995
Porin OmpC; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.559
HA50_24010
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.543
HA50_00960
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.432
HA50_29285
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.417
HA50_29730
4-hydroxybenzoate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.408
HA50_25450
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.404
Your Current Organism:
Pantoea cypripedii
NCBI taxonomy Id: 55209
Other names: ATCC 29267, Bacillus cypripedii, CFBP 3613, CIP 105195, DSM 3873, Erwinia carotovora var. cypripedii, Erwinia cypripedii, Erwinia cyrpipedii, LMG 2655, LMG 2657, LMG:2655, LMG:2657, NCPPB 3004, P. cypripedii, Pectobacterium cypripedii
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