STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA50_25450Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (398 aa)    
Predicted Functional Partners:
HA50_25455
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
HA50_23385
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.707
HA50_10110
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.682
HA50_29750
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.678
nanT
MFS transporter; Catalyzes the proton-dependent transport of sialic acid. Belongs to the major facilitator superfamily. Sialate:H(+) symporter (SHS) (TC 2.A.1.12) family.
  
     0.666
HA50_17315
Citrate-proton symporter; Is involved in the uptake of citrate and the transport of protons into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.630
HA50_29730
4-hydroxybenzoate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.625
HA50_10165
4-hydroxybenzoate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.623
HA50_19265
Proline/betaine transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.614
HA50_14985
Alpha-ketoglutarate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.610
Your Current Organism:
Pantoea cypripedii
NCBI taxonomy Id: 55209
Other names: ATCC 29267, Bacillus cypripedii, CFBP 3613, CIP 105195, DSM 3873, Erwinia carotovora var. cypripedii, Erwinia cypripedii, Erwinia cyrpipedii, LMG 2655, LMG 2657, LMG:2655, LMG:2657, NCPPB 3004, P. cypripedii, Pectobacterium cypripedii
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