STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA50_26060IS21 family transposase; Frameshifted; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (130 aa)    
Predicted Functional Partners:
HA50_22795
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.787
HA50_22810
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.743
HA50_21580
Zn-dependent exopeptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.724
HA50_27605
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.719
HA50_26365
Conjugal transfer protein TraI; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.680
HA50_27620
Sodium:solute symporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
     0.675
HA50_09675
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.663
HA50_08255
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.662
HA50_24860
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.659
HA50_23170
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.647
Your Current Organism:
Pantoea cypripedii
NCBI taxonomy Id: 55209
Other names: ATCC 29267, Bacillus cypripedii, CFBP 3613, CIP 105195, DSM 3873, Erwinia carotovora var. cypripedii, Erwinia cypripedii, Erwinia cyrpipedii, LMG 2655, LMG 2657, LMG:2655, LMG:2657, NCPPB 3004, P. cypripedii, Pectobacterium cypripedii
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