STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA50_26215Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (60 aa)    
Predicted Functional Partners:
HA50_26210
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
HA50_26220
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
HA50_26225
Type IV conjugative transfer system protein TraV; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.480
HA50_26230
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.480
HA50_26235
Type IV secretion system protein TraC; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.480
HA50_26240
type-F conjugative transfer system protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.458
HA50_26245
Conjugal transfer protein TraW; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.458
HA50_26250
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.458
HA50_26255
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.458
rfaH-2
Transcriptional activator RfaH; Enhances distal genes transcription elongation in a specialized subset of operons that encode extracytoplasmic components. RfaH is recruited into a multi-component RNA polymerase complex by the ops element, which is a short conserved DNA sequence located downstream of the main promoter of these operons. Once bound, RfaH suppresses pausing and inhibits Rho-dependent and intrinsic termination at a subset of sites. Termination signals are bypassed, which allows complete synthesis of long RNA chains.
       0.457
Your Current Organism:
Pantoea cypripedii
NCBI taxonomy Id: 55209
Other names: ATCC 29267, Bacillus cypripedii, CFBP 3613, CIP 105195, DSM 3873, Erwinia carotovora var. cypripedii, Erwinia cypripedii, Erwinia cyrpipedii, LMG 2655, LMG 2657, LMG:2655, LMG:2657, NCPPB 3004, P. cypripedii, Pectobacterium cypripedii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.