STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA50_26235Type IV secretion system protein TraC; Derived by automated computational analysis using gene prediction method: Protein Homology. (881 aa)    
Predicted Functional Partners:
HA50_26245
Conjugal transfer protein TraW; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.940
HA50_26195
Conjugal transfer protein TraB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.843
HA50_26290
type-F conjugative transfer system pilin assembly protein TrbC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.832
HA50_26285
Conjugal transfer protein TraU; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.831
HA50_26295
Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.831
HA50_26360
Type IV conjugative transfer system coupling protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.788
HA50_22865
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
   
 0.787
HA50_22825
type-F conjugative transfer system pilin assembly protein TraF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.785
HA50_22830
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.785
HA50_26330
Conjugal transfer protein TraH; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.785
Your Current Organism:
Pantoea cypripedii
NCBI taxonomy Id: 55209
Other names: ATCC 29267, Bacillus cypripedii, CFBP 3613, CIP 105195, DSM 3873, Erwinia carotovora var. cypripedii, Erwinia cypripedii, Erwinia cyrpipedii, LMG 2655, LMG 2657, LMG:2655, LMG:2657, NCPPB 3004, P. cypripedii, Pectobacterium cypripedii
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