STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGJ46885.2Hypothetical protein. (395 aa)    
Predicted Functional Partners:
EGJ46893.1
Hypothetical protein.
  
  
  0.845
EGJ47488.2
Hypothetical protein.
  
  
  0.835
EGJ47551.1
Hypothetical protein.
  
  
  0.820
EGJ47308.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
     
 0.817
EGJ46892.1
Hypothetical protein.
  
  
 
0.814
EGJ45417.1
Hypothetical protein.
  
     0.767
EGJ46884.1
Xylan 1,4-beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.648
EGJ46204.1
Hypothetical protein.
  
     0.552
EGJ46883.1
Hypothetical protein.
 
     0.538
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
   0.502
Your Current Organism:
Ruminococcaceae bacterium D16
NCBI taxonomy Id: 552398
Other names: R. bacterium D16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.