• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Dehly_0054 protein (Dehalogenimonas lykanthroporepellens) - STRING interaction network
"Dehly_0054" - KEGG: dev:DhcVS_200 ABC transporter, ATP-binding protein in Dehalogenimonas lykanthroporepellens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dehly_0054KEGG- dev-DhcVS_200 ABC transporter, ATP-binding protein; PFAM- ABC transporter related; SMART- AAA ATPase (654 aa)    
Predicted Functional Partners:
rpsG
30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA (157 aa)
   
      0.670
rplE
50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs (181 aa)
   
      0.609
rplA
50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release (237 aa)
     
      0.606
Dehly_1120
PFAM- sodium/hydrogen exchanger; TrkA-N domain protein; KEGG- deb-DehaBAV1_1372 sodium/hydrogen exchanger; Belongs to the monovalent cation-proton antiporter 2 (CPA2) transporter (TC 2.A.37) family (565 aa)
   
   
  0.567
hcp
Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O (520 aa)
   
        0.548
Dehly_0761
Maf-like protein Dehly_0761; KEGG- deh-cbdb_A1043 RNA methyltransferase; TIGRFAM- maf protein; RNA methyltransferase, TrmA family; PFAM- Maf family protein; (Uracil-5)-methyltransferase; Belongs to the maf family (612 aa)
 
        0.535
Dehly_0053
Histidine kinase; TIGRFAM- PAS sensor protein; PFAM- ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; response regulator receiver; KEGG- deg-DehalGT_0858 PAS/PAC sensor hybrid histidine kinase; SMART- ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver (648 aa)
              0.521
Dehly_0733
Histone acetyltransferase; PFAM- Radical SAM domain protein; GCN5-related N-acetyltransferase; KEGG- dev-DhcVS_551 radical SAM superfamily; SMART- Elongator protein 3/MiaB/NifB (471 aa)
   
 
  0.497
Dehly_1126
KEGG- deb-DehaBAV1_0374 HAD family hydrolase; TIGRFAM- HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM- Haloacid dehalogenase domain protein hydrolase; peptidase M22 glycoprotease (455 aa)
 
   
  0.495
Dehly_1167
KEGG- gme-Gmet_2573 ATP-dependent RNA helicase RhlE; PFAM- DEAD/DEAH box helicase domain protein; helicase domain protein; SMART- DEAD-like helicase ; helicase domain protein; Belongs to the DEAD box helicase family (429 aa)
 
 
  0.480
Your Current Organism:
Dehalogenimonas lykanthroporepellens
NCBI taxonomy Id: 552811
Other names: Chloroflexi bacterium BL-DC-8, Chloroflexi bacterium BL-DC-9, D. lykanthroporepellens BL-DC-9, Dehalogenimonas lykanthroporepellens, Dehalogenimonas lykanthroporepellens BL-DC-9, Dehalogenimonas lykanthroporepellens str. BL-DC-9, Dehalogenimonas lykanthroporepellens strain BL-DC-9
Server load: low (10%) [HD]