STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADJ26295.1TIGRFAM: lysine 2,3-aminomutase YodO family protein; KEGG: deg:DehalGT_0563 lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein. (431 aa)    
Predicted Functional Partners:
ADJ26296.1
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
     0.954
ADJ26298.1
PFAM: GCN5-related N-acetyltransferase; KEGG: psl:Psta_3376 GCN5-related N-acetyltransferase.
 
    0.871
ADJ26297.1
D-alanine--D-alanine ligase; KEGG: tnp:Tnap_0342 methyltransferase type 11; PFAM: D-alanine--D-alanine ligase domain protein.
 
     0.842
mntP
Protein of unknown function DUF204; Probably functions as a manganese efflux pump. Belongs to the MntP (TC 9.B.29) family.
       0.506
ADJ26183.1
PFAM: tRNA synthetase class II (D K and N); KEGG: deh:cbdb_A853 lysyl-tRNA synthetase-related protein.
 
  
 0.438
ADJ26299.1
TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: deh:cbdb_A1629 sensor histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.
       0.414
Your Current Organism:
Dehalogenimonas lykanthroporepellens
NCBI taxonomy Id: 552811
Other names: Chloroflexi bacterium BL-DC-8, Chloroflexi bacterium BL-DC-9, D. lykanthroporepellens BL-DC-9, Dehalogenimonas lykanthroporepellens BL-DC-9, Dehalogenimonas lykanthroporepellens str. BL-DC-9, Dehalogenimonas lykanthroporepellens strain BL-DC-9
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