STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADJ26730.1PFAM: protein of unknown function UPF0150; KEGG: mac:MA2134 hypothetical protein. (86 aa)    
Predicted Functional Partners:
ADJ26731.1
YcfA family protein; KEGG: mar:MAE_31920 hypothetical protein; manually curated; PFAM: YcfA family protein.
   
 
 0.862
ADJ26707.1
YcfA family protein; KEGG: mar:MAE_55720 hypothetical protein; manually curated; PFAM: YcfA family protein.
  
 
   0.648
ADJ25477.1
PFAM: protein of unknown function UPF0150; KEGG: tac:Ta0767 hypothetical protein.
  
     0.617
ADJ25478.1
PFAM: YcfA family protein; KEGG: tye:THEYE_A0467 hypothetical protein.
 
 
 
 0.613
ADJ25499.1
PFAM: YcfA family protein; KEGG: ana:asl1824 hypothetical protein.
 
 
 
 0.538
vapC
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.435
ADJ25512.1
PFAM: YcfA family protein; KEGG: swo:Swol_0794 hypothetical protein.
   
 
 0.418
Your Current Organism:
Dehalogenimonas lykanthroporepellens
NCBI taxonomy Id: 552811
Other names: Chloroflexi bacterium BL-DC-8, Chloroflexi bacterium BL-DC-9, D. lykanthroporepellens BL-DC-9, Dehalogenimonas lykanthroporepellens BL-DC-9, Dehalogenimonas lykanthroporepellens str. BL-DC-9, Dehalogenimonas lykanthroporepellens strain BL-DC-9
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