STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADJ26746.1KEGG: deh:cbdb_A267 hypothetical protein. (198 aa)    
Predicted Functional Partners:
ADJ26745.1
PFAM: protein of unknown function DUF87; HerA-ATP synthase, barrel domain; KEGG: dev:DhcVS_268 hypothetical protein.
 
     0.955
ADJ26748.1
PFAM: NurA domain; KEGG: det:DET0328 hypothetical protein.
 
     0.900
ADJ26096.1
PFAM: SMC domain protein; KEGG: det:DET0549 exonuclease SbcC, putative.
 
     0.790
sbcD
Nuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
 
     0.784
ADJ25693.1
PFAM: HEAT domain containing protein; KEGG: deg:DehalGT_0463 heat repeat-containing PBS lyase.
  
     0.734
ADJ26519.1
KEGG: deh:cbdb_A1309 putative type IV pilus assembly family protein.
  
     0.666
ADJ26588.1
PFAM: ABC-2 type transporter; KEGG: det:DET0114 ABC transporter, substrate-binding protein, putative.
  
     0.650
ADJ26638.1
PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: deg:DehalGT_1394 sec-independent translocation protein MttA/Hcf106.
  
     0.580
ADJ25869.1
KEGG: det:DET0571 hypothetical protein.
  
     0.534
ADJ26071.1
PFAM: thiamine monophosphate synthase; KEGG: dev:DhcVS_688 ThiE-associated domain protein/thiamine-phosphate pyrophosphorylase.
  
     0.491
Your Current Organism:
Dehalogenimonas lykanthroporepellens
NCBI taxonomy Id: 552811
Other names: Chloroflexi bacterium BL-DC-8, Chloroflexi bacterium BL-DC-9, D. lykanthroporepellens BL-DC-9, Dehalogenimonas lykanthroporepellens BL-DC-9, Dehalogenimonas lykanthroporepellens str. BL-DC-9, Dehalogenimonas lykanthroporepellens strain BL-DC-9
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