Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADJ26941.1Transcriptional regulator, Crp/Fnr family; KEGG: dat:HRM2_24100 Crp; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp. (234 aa)    
Predicted Functional Partners:
ADJ26943.1
KEGG: dat:HRM2_24360 hypothetical protein.
 
     0.811
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 0.690
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.653
sigA
RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.650
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.638
ADJ26302.1
KEGG: fpl:Ferp_1321 rhodanese domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein.
  
 
  0.636
ADJ26860.1
PFAM: CBS domain containing protein; KEGG: kol:Kole_1597 CBS domain containing membrane protein.
   
 0.625
ADJ26944.1
PFAM: protein of unknown function DUF1291; KEGG: dal:Dalk_4103 protein of unknown function DUF1291.
 
     0.581
ADJ26940.1
KEGG: sfu:Sfum_3812 hypothetical protein.
       0.572
ADJ26946.1
PFAM: NADPH-dependent FMN reductase; KEGG: dat:HRM2_24110 Isf.
 
     0.562
Your Current Organism:
Dehalogenimonas lykanthroporepellens
NCBI taxonomy Id: 552811
Other names: Chloroflexi bacterium BL-DC-8, Chloroflexi bacterium BL-DC-9, D. lykanthroporepellens BL-DC-9, Dehalogenimonas lykanthroporepellens BL-DC-9, Dehalogenimonas lykanthroporepellens str. BL-DC-9, Dehalogenimonas lykanthroporepellens strain BL-DC-9
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