STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADJ26941.1Transcriptional regulator, Crp/Fnr family; KEGG: dat:HRM2_24100 Crp; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp. (234 aa)    
Predicted Functional Partners:
ADJ26943.1
KEGG: dat:HRM2_24360 hypothetical protein.
 
     0.812
ADJ26662.1
KEGG: det:DET1631 TPR domain-containing protein; PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide repeat.
   
 
 0.610
ADJ26743.1
PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: det:DET1605 6-pyruvoyl tetrahydrobiopterin synthase, putative.
    
  0.609
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
   0.593
ADJ26944.1
PFAM: protein of unknown function DUF1291; KEGG: dal:Dalk_4103 protein of unknown function DUF1291.
 
     0.582
ADJ25387.1
PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; response regulator receiver; KEGG: deg:DehalGT_0858 PAS/PAC sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver.
  
 
 0.580
ADJ26940.1
KEGG: sfu:Sfum_3812 hypothetical protein.
       0.572
ADJ26433.1
PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; response regulator receiver; KEGG: deh:cbdb_A989 sensor histidine kinase/response regulator; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; response regulator receiver.
  
 
 0.562
ADJ26946.1
PFAM: NADPH-dependent FMN reductase; KEGG: dat:HRM2_24110 Isf.
 
     0.562
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.552
Your Current Organism:
Dehalogenimonas lykanthroporepellens
NCBI taxonomy Id: 552811
Other names: Chloroflexi bacterium BL-DC-8, Chloroflexi bacterium BL-DC-9, D. lykanthroporepellens BL-DC-9, Dehalogenimonas lykanthroporepellens BL-DC-9, Dehalogenimonas lykanthroporepellens str. BL-DC-9, Dehalogenimonas lykanthroporepellens strain BL-DC-9
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