STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADK95361.1Identified by match to protein family HMM PF02021; Belongs to the UPF0102 family. (121 aa)    
Predicted Functional Partners:
ADK95813.1
biotin--[acetyl-CoA-carboxylase] ligase; Identified by match to protein family HMM PF03099; match to protein family HMM TIGR00121.
       0.817
pyrH
UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
       0.719
ADK96311.1
Mg chelatase-like protein; Identified by match to protein family HMM PF01078; match to protein family HMM PF07728; match to protein family HMM TIGR00368.
 
  
 0.664
tadA
Cytidine and deoxycytidylate deaminase zinc-binding region; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
       0.654
ADK96637.1
Identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360.
  
    0.456
dprA
DNA protecting protein DprA; Identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732.
 
    0.409
Your Current Organism:
Prevotella melaninogenica
NCBI taxonomy Id: 553174
Other names: P. melaninogenica ATCC 25845, Prevotella melaninogenica ATCC 25845, Prevotella melaninogenica CCUG 4944 B, Prevotella melaninogenica CIP 105346, Prevotella melaninogenica JCM 6325, Prevotella melaninogenica str. ATCC 25845, Prevotella melaninogenica strain ATCC 25845
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.