STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acdacyl-CoA dehydrogenase, C-terminal domain protein; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028. (576 aa)    
Predicted Functional Partners:
nifJ
Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
  
 0.990
etfA
Electron transfer flavoprotein FAD-binding domain protein; Identified by match to protein family HMM PF00766; match to protein family HMM PF01012.
 
 0.985
etfB
Electron transfer flavoprotein domain protein; Identified by match to protein family HMM PF01012.
 
 
 0.980
crt
3-hydroxybutyryl-CoA dehydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.946
etfA-2
Electron transfer flavoprotein FAD-binding domain protein; Identified by match to protein family HMM PF00766; match to protein family HMM PF01012.
 
 0.919
EEN82369.1
Electron transfer flavoprotein domain protein; Identified by match to protein family HMM PF01012.
 
 
 0.900
hbd
3-hydroxybutyryl-CoA dehydrogenase; Identified by match to protein family HMM PF00725; match to protein family HMM PF02737.
 
 0.857
rnfB
Ferredoxin; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
  
 0.802
EEN82975.1
4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037.
   
 0.720
EEN82519.1
methylmalonyl-CoA mutase; Identified by match to protein family HMM PF01642; match to protein family HMM PF02310; match to protein family HMM TIGR00640; match to protein family HMM TIGR00641.
  
 
 0.688
Your Current Organism:
Porphyromonas endodontalis
NCBI taxonomy Id: 553175
Other names: P. endodontalis ATCC 35406, Porphyromonas endodontalis ATCC 35406, Porphyromonas endodontalis str. ATCC 35406, Porphyromonas endodontalis strain ATCC 35406
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.