STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEN82351.1D-Lysine 5,6-aminomutase alpha subunit; Identified by match to protein family HMM PF09043. (523 aa)    
Predicted Functional Partners:
EEN82476.1
B12 binding domain protein; Identified by match to protein family HMM PF02310.
 
  0.999
EEN82300.1
Oxidoreductase, zinc-binding dehydrogenase family protein; Identified by match to protein family HMM PF00107.
 
  
  0.981
EEN82333.1
Hypothetical protein.
 
     0.956
nifJ
Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
  
 
  0.926
ablA
Lysine-2,3-aminomutase; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR00238.
    
 0.918
EEN82471.1
MutS domain V protein; Identified by match to protein family HMM PF00488.
 
    0.877
EEN82344.1
beta-alanyl-CoA:ammonia lyase.
 
    0.858
EEN82389.1
Identified by match to protein family HMM PF05853.
 
     0.766
EEN82373.1
3-oxoacid CoA-transferase, B subunit; Identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428.
   
   0.702
sucD
Succinate-semialdehyde dehydrogenase.
  
 0.632
Your Current Organism:
Porphyromonas endodontalis
NCBI taxonomy Id: 553175
Other names: P. endodontalis ATCC 35406, Porphyromonas endodontalis ATCC 35406, Porphyromonas endodontalis str. ATCC 35406, Porphyromonas endodontalis strain ATCC 35406
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.