STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB66337.1Identified by match to protein family HMM PF00691. (360 aa)    
Predicted Functional Partners:
EEB65188.1
Identified by match to protein family HMM PF00691; match to protein family HMM PF02412.
  
  
 
0.603
EEB65503.1
Transglycosylase SLT domain protein; Identified by match to protein family HMM PF01464; match to protein family HMM PF01476.
  
 
   0.513
EEB66866.1
Identified by match to protein family HMM PF00691.
  
 
0.496
EEB64804.1
Identified by match to protein family HMM PF00691; match to protein family HMM PF07676.
  
  
0.495
EEB66253.1
Hypothetical protein; Identified by glimmer; putative.
       0.490
EEB64694.1
Identified by match to protein family HMM PF00691; match to protein family HMM PF07676.
  
  
0.490
rplY
Ribosomal protein L25, Ctc-form; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
  
   0.419
EEB66370.1
Hypothetical protein; Identified by glimmer; putative.
       0.403
EEB66247.1
Hypothetical protein.
       0.403
Your Current Organism:
Capnocytophaga sputigena
NCBI taxonomy Id: 553177
Other names: C. sputigena ATCC 33612, Capnocytophaga sputigena ATCC 33612, Capnocytophaga sputigena Capno, Capnocytophaga sputigena str. ATCC 33612, Capnocytophaga sputigena strain ATCC 33612
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