STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB64935.1Phospholipase A1; Identified by match to protein family HMM PF02253. (309 aa)    
Predicted Functional Partners:
EEB66570.1
Putative CDP-diacylglycerol-serine O-phosphatidyltransferase; Identified by match to protein family HMM PF01066; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
     
  0.900
psd
Phosphatidylserine decarboxylase; Identified by match to protein family HMM PF02666; match to protein family HMM TIGR00164.
     
  0.900
EEB65804.1
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103.
    
 
 0.553
yaeT
Outer membrane protein assembly complex, YaeT protein; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM TIGR03303.
    
 
 0.553
EEB65368.1
Hypothetical protein; Identified by glimmer; putative.
  
 
   0.524
EEB64949.1
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
       0.483
yfiO
Outer membrane assembly lipoprotein YfiO; Identified by match to protein family HMM PF07719; match to protein family HMM TIGR03302.
    
   0.459
EEB64946.1
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
       0.411
Your Current Organism:
Capnocytophaga sputigena
NCBI taxonomy Id: 553177
Other names: C. sputigena ATCC 33612, Capnocytophaga sputigena ATCC 33612, Capnocytophaga sputigena Capno, Capnocytophaga sputigena str. ATCC 33612, Capnocytophaga sputigena strain ATCC 33612
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.