STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB65260.1Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128; match to protein family HMM PF09087; Belongs to the glycosyl hydrolase 13 family. (609 aa)    
Predicted Functional Partners:
EEB66723.1
Identified by match to protein family HMM PF07980.
 
  
 0.744
EEB66751.1
Hypothetical protein.
 
  
 0.718
EEB66606.1
TonB-linked outer membrane protein, SusC/RagA family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.703
glgA1
Starch synthase catalytic domain protein; Identified by match to protein family HMM PF08323.
  
  
 0.667
EEB66620.1
Glycosyl hydrolase family 65 central catalytic domain protein; Identified by match to protein family HMM PF03632; match to protein family HMM PF03636.
 
  
 0.641
glgP
Alpha-glucan phosphorylase; Identified by match to protein family HMM PF00343; match to protein family HMM PF05693; match to protein family HMM TIGR02094.
  
 
 0.638
EEB64555.1
Hypothetical protein.
 
  
 0.602
EEB65244.1
Hypothetical protein; Identified by glimmer; putative.
       0.572
EEB65258.1
Hypothetical protein; Identified by glimmer; putative.
       0.542
lnt
Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.
  
     0.510
Your Current Organism:
Capnocytophaga sputigena
NCBI taxonomy Id: 553177
Other names: C. sputigena ATCC 33612, Capnocytophaga sputigena ATCC 33612, Capnocytophaga sputigena Capno, Capnocytophaga sputigena str. ATCC 33612, Capnocytophaga sputigena strain ATCC 33612
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.